ABOUT THIS RECORDspecies: Liriodendron tulipifera
source: PMRD, original name: ltu-miR319
Taxonomy by NCBI:
Liriodendron tulipifera Liriodendron Magnoliaceae Magnoliales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCC miRNA* GAGCTCTCTTCAGTCCAGTC mismatches: 1 bulges: 0 |
pre-miRNA
AGGAGCTCTCTTCAGTCCAGTCCAAGATAGTATTAAGCCAATCTCCGCTGCTGACTCGTTGGCTCATGAACTCATCCAACGGCTAGGATTCCGATGTGTT
TTTGATCCAACGATGCGGGAGCCGTGTTTGGTTCTGTCTGTCTCGTCTTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
.(((((((((((((((((((..(.((((((.((..((((((.(.(.(((.(((..(((((((.(((.((((.((((....((........)))))).)))
).))).)))))))..))).))).).).))))))..)))))))).)..))))))))))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGAGCTCTCTTCAGTCCAGTCCAAGATAGTATTAAGCCAATCTCCGCTGCTGACTCGTTGGCTCATGAACTCATCCAACGGCTAGGATTCCGATGTGTT
TTTGATCCAACGATGCGGGAGCCGTGTTTGGTTCTGTCTGTCTCGTCTTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
.(((((((((((((((((((..(.((((((.((..((((((.(.(.(((.(((..(((((((.(((.((((.((((....((........)))))).)))
).))).)))))))..))).))).).).))))))..)))))))).)..))))))))))))))))))).
SIMILARITIES| miRBase vvi-MIR319b: 0.00000000000004 PMRD vvi-miR319b: 0.00000000000004 microPC miR319: 4e-91 | UniProt no hits RFAM MIR159: 0.0000000000007 |
Identical with: miR319 from microPC (MNEST045249) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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