miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST048712
species: Medicago truncatula
miRNA family: MIR166
source: PMRD, original name: mtr-miR166b

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGGCTGGCTCGAGG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 GGGGAATGTTGGCTGGCTCGAGGCTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCTTCGGACCAGGCTTCATTCCCC

dot-bracket secondary structure
((((((((..(.((((..(((((((((..(((((.((((...(((......)))..))))..)))))..)))))))))..)))).)..))))))))


SIMILARITIES
miRBase mtr-MIR166e: 1e-49

PMRD gma-miR166o: 0.000000000001

microPC miR166: 1e-49		UniProt no hits

RFAM mir-166: 2e-48

Identical with: miR166 from microPC (MNEST046081)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Bonnet E, Unpublished (2007).,



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