ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR166
source: PMRD, original name: mtr-miR166d
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
GGGGAATGTTGTCTGGCTCGAGGACTCTTTCTTCTCGATCTAATGCAAATTTGTGGTCATGGATTGTAAAGTATTCTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..((((((..((((.....(((((((.((((....))))....))))))).))))..))))))..))))))..))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GGGGAATGTTGTCTGGCTCGAGGACTCTTTCTTCTCGATCTAATGCAAATTTGTGGTCATGGATTGTAAAGTATTCTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..((((((..((((.....(((((((.((((....))))....))))))).))))..))))))..))))))..))))))))
SIMILARITIES| miRBase mtr-MIR166g: 8e-48 PMRD ptc-miRf10467-akr: 0.000000000005 microPC miR166: 8e-48 | UniProt no hits RFAM mir-166: 1e-46 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
