ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR167
source: PMRD, original name: mtr-miR167
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTGTGCTAGCCTCACT mismatches: 1 bulges: 2 |
pre-miRNA
AAAAGTGAAGCTGCCAGCATGATCTAGGTTTGGTTATACAATAGTAGTATTGAGAAGGAACTATATACGTTTTTTTTTTACTATACCACAAAAAAAGATT
ACTCTCTTTCACAAAATAGGTATTAAAGTGCCATGATTTTTGCATTACTAATGGGAAAATAAATTTTGGACACCGAATTTCTCACTTTTTTTTTATATAG
ATAGGAAATAGGTTTTGGTGGTATTTTTTTGTGGTACAGTAAAAAATAGCCGCTATATCCATACAAGTAGTACTGCTAGCATAACCCTGACTAGGTCATG
CTGTGCTAGCCTCACTCCTT
dot-bracket secondary structure
...(((((.((((((((((((((((((....((((((....(((((((((((....(((....((((((.((.(((((((((.(((((((((((((....
...........((((((.(((((....)))))...((((((.(((.....))).))))))..))))))..(((((((......((((.((((((((....
)))))))).)))))))))))...))))))))))))).))))))))).)).)).))))))).......)))))))))))..))))))....))))))))))
))).)).))).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
AAAAGTGAAGCTGCCAGCATGATCTAGGTTTGGTTATACAATAGTAGTATTGAGAAGGAACTATATACGTTTTTTTTTTACTATACCACAAAAAAAGATT
ACTCTCTTTCACAAAATAGGTATTAAAGTGCCATGATTTTTGCATTACTAATGGGAAAATAAATTTTGGACACCGAATTTCTCACTTTTTTTTTATATAG
ATAGGAAATAGGTTTTGGTGGTATTTTTTTGTGGTACAGTAAAAAATAGCCGCTATATCCATACAAGTAGTACTGCTAGCATAACCCTGACTAGGTCATG
CTGTGCTAGCCTCACTCCTT
dot-bracket secondary structure
...(((((.((((((((((((((((((....((((((....(((((((((((....(((....((((((.((.(((((((((.(((((((((((((....
...........((((((.(((((....)))))...((((((.(((.....))).))))))..))))))..(((((((......((((.((((((((....
)))))))).)))))))))))...))))))))))))).))))))))).)).)).))))))).......)))))))))))..))))))....))))))))))
))).)).))).)))))....
SIMILARITIES| miRBase mtr-MIR167: 1e-123 PMRD gma-miR167d: 0.000000000001 microPC miR167: 0.00000007 | UniProt no hits RFAM MIR167_1: 2e-122 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
