miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST048727
species: Medicago truncatula
source: PMRD, original name: mtr-miR235c

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAATGTGTTGTGTTTGTCTC

miRNA*
 GGTCACACAAAAACATTCT

mismatches: 5
bulges: 2
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pre-miRNA
 TCAATGTGTTGTGTTTGTCTCTTTAGTATACTAAAAAATGAGGTCACACAAAAACATTCT

dot-bracket secondary structure
..(((((.((((((...(((((((((....)))))....))))..))))))..)))))..


SIMILARITIES
miRBase no hits

PMRD mtr-miR235b: 2e-28

microPC no hits		UniProt no hits

RFAM no hits

Identical with: mtr-miR235b from PMRD (MNEST048726)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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