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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST048806
species:
Oryza sativa
miRNA family:
MIR156
source:
PMRD, original name:
osa-miR156f
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC
miRNA*
GCTCACTTCTCTTTCTGTCAGC
mismatches:
0
bulges:
2
View larger
pre-miRNA
AGT
TGACAGAAGAGAGTGAGCAC
ACAGCGGCCAGACTGCATCGATCTATCAATCTTCCCTTCGACAGGATAGCTAGATAGAAAGAAAGAGAGGCCGTCGG
CGGCCATGGAAGAGAGAGAGAGAGAGAGATGAAATGATGATGATGATACAGCTGCCGCTGCGT
GCTCACTTCTCTTTCTGTCAGC
T
dot-bracket secondary structure
(((
((((((((((((((((((((
.(((((((.((.(((((((..(((.((..((((((.(((....)))......................(((((....
)))))..))))))..)).....)))..))))..((.((....)).)).)))))))))))).))
)))))).)))).))))))))))
)
SIMILARITIES
miRBase
osa-MIR156f
:
5e-69
PMRD
sbi-miR156i
:
7e-16
microPC
miR156
:
0.0000006
UniProt
no hits
RFAM
mir-156: 0.00000000000001
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP,
Genes Dev. 16:1616-1626(2002).
,
"MicroRNAs in plants"