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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST048822
species:
Oryza sativa
miRNA family:
MIR159
source:
PMRD, original name:
osa-miR159d
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTGGATTGAAGGGAGCTCCG
miRNA*
GAGCTCCTTTCGATCCAATTC
mismatches:
1
bulges:
0
View larger
pre-miRNA
TGATGTGAGGAG
GAGCTCCTTTCGATCCAATTC
AGGAGAGGAAGTGGTGGGATGCAGCTGCCGGTTCATGGATACCTCTGCAGTTCATGCCGGTAGGCCT
GCACTTGCATGGGTTTGCATGACCTGGGAGATGAACCTGCCATTGTGTTCCTCTATTG
ATTGGATTGAAGGGAGCTCCG
GCTACACCTA
dot-bracket secondary structure
....(((((..(
(((((((((((((((((((.(
((.(((((((((((..((...((.((.((((.(((((.(.((((.((((((.((.(((....))).)
).)).)))).)))).).))))).)))).)).))..))..))))....))))))).)))
)))))))))))))))))))).
.)).)))...
SIMILARITIES
miRBase
osa-MIR159d
:
8e-105
PMRD
osa-miR159c
:
2e-56
microPC
miR159
:
1e-17
UniProt
no hits
RFAM
MIR159: 2e-103
Identical with:
osa-MIR159d
from miRBase (
MNEST041920
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Jones-Rhoades MW, Bartel DP,
Mol Cell. 14:787-799(2004).
,
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"