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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST048823
species:
Oryza sativa
miRNA family:
MIR159
source:
PMRD, original name:
osa-miR159e
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTGGATTGAAGGGAGCTCCT
miRNA*
GAGCTCCCTTTCGATCCAATTC
mismatches:
1
bulges:
1
View larger
pre-miRNA
GATGAAGAAGAA
GAGCTCCCTTTCGATCCAATTC
AGGAGAGGAAGTGGTAGGATGCAGCTGCCGGTTCATGGATACCTCTGGAGTGCAGGGCAAATAGTC
CTACCCTTTCATGGGTTTGCATGACTCGGGAGATGAACCCGCCATTGTCTTCCTCTATTG
ATTGGATTGAAGGGAGCTCCT
CTAGCTACAT
dot-bracket secondary structure
.(((.((.(((.
((((((((((.(((((((((.(
((.(((((((((((..((...((.((.(((..(((((.(.((((.(((((.(.(((((.....)))
)).).).)))).)))).).)))))..))).)).))..))..)))....)))))))).)))
))))))))))))))))))).)
))..)).)))
SIMILARITIES
miRBase
osa-MIR159e
:
5e-106
PMRD
osa-miR159c
:
3e-55
microPC
miR319
:
4e-17
UniProt
no hits
RFAM
MIR159: 1e-104
Identical with:
osa-MIR159e
from miRBase (
MNEST041921
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Jones-Rhoades MW, Bartel DP,
Mol Cell. 14:787-799(2004).
,
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"