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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Brachypodium distachyon
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST048825
species:
Oryza sativa
miRNA family:
MIR159
source:
PMRD, original name:
osa-miR159m
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTG
miRNA*
GAGCTCCTTTCGGTCCAAAAAGG
mismatches:
2
bulges:
2
View larger
pre-miRNA
TT
GAGCTCCTTTCGGTCCAAAAAGG
GGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGACTACTCCATGTTCATCATTCAGCTCGA
GATCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGGGATAGGCTTATGGCTTGCATGCCCCAG
GAGCTGCATCAACCCTACATGGACCCTC
TTTGGATTGAAGGGAGCTCTG
dot-bracket secondary structure
..
((((((((((((((((((..(((
((.(((..(((((((.(((..((((.(((((.((((.((((((...((.((((((((.....((.(((((.....
...))))).))......(((.((((((((...........)))))))).))).....)))))))).))..))))))((((.....)))).)))).)))))
.))))..))).)))).)))..)))))))
)))))))))))))))))))..
SIMILARITIES
miRBase
osa-MIR159a
:
2e-131
PMRD
osa-miR159a
:
2e-131
microPC
miR319
:
0.000003
UniProt
no hits
RFAM
MIR159: 3e-130
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
download this record
deep sequencing data evidence