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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST048828
species:
Oryza sativa
miRNA family:
MIR160
source:
PMRD, original name:
osa-miR160c
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA
miRNA*
GCGTGCACGGAGCCAAGCATA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GGAATG
TGCCTGGCTCCCTGTATGCCA
CTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATG
GCGTGCACGGAGCCAAGCATA
TTCC
dot-bracket secondary structure
((((((
(((.(((((((.(((((((((
..(((((((.(((((...(((....)))..)))))))).))))..))
))))))).))))))).)))))
))))
SIMILARITIES
miRBase
osa-MIR160c
:
2e-51
PMRD
ttu-miR160a
:
3e-16
microPC
miR160
:
5e-43
UniProt
no hits
RFAM
mir-160: 1e-46
Identical with:
miR160
from microPC (
MNEST046227
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP,
Genes Dev. 16:1616-1626(2002).
,
"MicroRNAs in plants"