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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST048836
species: Oryza sativa
miRNA family: MIR162
source: PMRD, original name: osa-miR162m

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGATAAGCCTCTGCATCCAG

miRNA*
 GGGCGCAGTGGTTTATCGATC

mismatches: 3
bulges: 0
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pre-miRNA
 CTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAA
GCCTCTGCATCCAG

dot-bracket secondary structure
((((..((((.((((((((((((..((((.(((.(((((....((.(((((..((....)))))))...)).....))))).)))))))..)))))))))
))).))))..))))


SIMILARITIES
miRBase osa-MIR162b: 3e-60

PMRD osa-miR162b: 3e-60

microPC miR162: 3e-60		UniProt no hits

RFAM MIR162_2: 5e-59

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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence




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