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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST048840
species: Oryza sativa
miRNA family: MIR164
source: PMRD, original name: osa-miR164c

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGTACGTGCA

miRNA*
 CACGTGCTCCCCTTCTCCACC

mismatches: 2
bulges: 0
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pre-miRNA
 AGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGGTGATCGAATGCACGTGCTCC
CCTTCTCCACCATGGCCTT

dot-bracket secondary structure
(((((..((.((((((((..(((((((((((.......(((((((((.(((((((........))))).)))))))..))))......))))))))))).
.)))))))).)).))))).


SIMILARITIES
miRBase osa-MIR164c: 3e-63

PMRD sbi-miR164e: 0.0000004

microPC miR164: 3e-51		UniProt no hits

RFAM MIR164: 5e-62

Identical with: miR164 from microPC (MNEST045884)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"



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