ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR164
source: PMRD, original name: osa-miR164d
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCT miRNA* CATGTGCGCTCCTTCTCCAGC mismatches: 2 bulges: 0 |
pre-miRNA
CAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTC
dot-bracket secondary structure
....((((((((((((((.((.(((((((((.....(((((.((((((....)))))))))))))))))))).)).))))))))))))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTC
dot-bracket secondary structure
....((((((((((((((.((.(((((((((.....(((((.((((((....)))))))))))))))))))).)).))))))))))))))....
SIMILARITIES| miRBase osa-MIR164d: 2e-48 PMRD sbi-miR164b: 0.000000000005 microPC miR164: 0.0003 | UniProt no hits RFAM MIR164: 3e-47 |
Identical with: osa-MIR164d from miRBase (MNEST041934) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
