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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST048847
species: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166d

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGG
CTTCATTCCCCTCAAGTAAAGCTCC

dot-bracket secondary structure
..((((((...((((.((((((((((..((((((..((((((.((.((((....))))((((((......)))))).........))))))))..)))))
)..))))))))))))))))))))..


SIMILARITIES
miRBase osa-MIR166d: 8e-67

PMRD zma-miR166p: 0.0000000001

microPC miR166: 7e-49		UniProt no hits

RFAM mir-166: 2e-52

Identical with: miR166 from microPC (MNEST046452)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence

references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"



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