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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST048848
species: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166e

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGAACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGTTCAAGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 TGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTT
TGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATA

dot-bracket secondary structure
((((((((((.((((((..(((((((((.((..(((..(((((.((.(((....((((.....((((((......))))))..)))).))).)).)))))
.)))..)).)))))))))..)))))).))))))))))


SIMILARITIES
miRBase osa-MIR166e: 6e-74

PMRD osa-miR166a: 0.000000002

microPC miR166: 0.0001		UniProt no hits

RFAM mir-166: 7e-68

Identical with: osa-MIR166e from miRBase (MNEST041941)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"



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