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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004885
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGAATGTGGGCAATACTAGA

miRNA*
 TATCATTGCCCACATTCATAT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TGCAAGTGCAAACCAAGATAATACTCCCTCCGTTTCATATTATAAGACTTTCTATCATTGCCCACATTCATATAGATGCTAATGAATCTAGACATATATA
TATATATGAATGTGGGCAATACTAGATAGTCTTATAATATAAAACGGAGGAAGTATATCTTATGCATGTGCACCG

dot-bracket secondary structure
((((.(((((....((((((.((((.(((((((((.(((((((((((((.((((..((((((((((((((((((.((((((.......))).))).....
..))))))))))))))))))..)))).))))))))))))).))))))))).)))))))))).))))).))))...


SIMILARITIES
miRBase osa-MIR819e: 7e-28

PMRD osa-miR819e: 7e-28

microPC miR819: 2e-16		UniProt no hits

RFAM MIR1122: 2e-50		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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