ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166i
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGATCAGGCTTCATTCCTC miRNA* GGAATGCAGTTTGATCCAAGA mismatches: 4 bulges: 0 |
pre-miRNA
AGATAGGTGTTTGGAATGCAGTTTGATCCAAGATCTGCCTATATATATGGTGTGTATATCATATCTTGTGATATGGGGGATATGCAACAGGTGTGTGACA
GGGGTAGGTAGATCTCGGATCAGGCTTCATTCCTCACACCAATAC
dot-bracket secondary structure
.....(((((..((((((.((((((((((.((((((((((((((((((.((((((((.(((((((....)))))))...)))))).))..))))))....
...)))))))))))).)))))))))).))))))..))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
AGATAGGTGTTTGGAATGCAGTTTGATCCAAGATCTGCCTATATATATGGTGTGTATATCATATCTTGTGATATGGGGGATATGCAACAGGTGTGTGACA
GGGGTAGGTAGATCTCGGATCAGGCTTCATTCCTCACACCAATAC
dot-bracket secondary structure
.....(((((..((((((.((((((((((.((((((((((((((((((.((((((((.(((((((....)))))))...)))))).))..))))))....
...)))))))))))).)))))))))).))))))..))))).....
SIMILARITIES| miRBase osa-MIR166i: 1e-78 PMRD osa-miR166j: 1e-75 microPC miR166: 0.00003 | UniProt no hits RFAM mir-166: 2e-71 |
Identical with: osa-MIR166j from miRBase (MNEST041946) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
