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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST048856
species: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166m

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCT

miRNA*
 GGTTTGTTGTCTGGTTCAAGG

mismatches: 5
bulges: 0
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pre-miRNA
 CTCTGCTTTGGTGGTTGGCTGATGTTCTCGGTTAAGGGGTTTGTTGTCTGGTTCAAGGCCTCCTGCTGTCCTACATCACATTTTTTTTTCTTTGTTCTGA
ATTTCTGATGGATGTGTGTGTGCATGATGCATGGCTGGTGGTGACCTCGGACCAGGCTTCATTCCCTTTAACCAGCATTTGCGTTAATACCATCAGGCAT


dot-bracket secondary structure
...(((((.((((((..((.((((((...((((((((((..((..(((((((((.(((((.((.(((....((((((.((((.....(((........))
).....))))))))))...((((.....))))))).)).))...))).)))))))))..))..)))))))))))))))).))......))))))))))).



SIMILARITIES
miRBase osa-MIR166m: 3e-95

PMRD osa-miR166l: 0.0000000002

microPC miR166: 0.00004		UniProt no hits

RFAM mir-166: 2e-59

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Li Y, Li W, Jin YX, Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005)., "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"



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