ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: PMRD, original name: osa-miR167e
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGTTGCAGCTTCACT mismatches: 0 bulges: 1 |
pre-miRNA
TGTGAGAGAATGAAGCTGCCAGCATGATCTGGTTGTCAGGCATGAGCCAAATCTATCCATGGTGTTGGTGGTACTGAAATTACCGCGTTTTCGAGGTTTT
TCGTCGTGTCAACTTGCGAAGGGAATTACGGGTTCTTGATGAGCATTGGTGATAGGAGGTGTGGGCTTGGTTAGTAGAGGTAGAATTATGATTGTTCTTG
TGAGTTTCAGTAAGAGGTGGGAGTGATTGGAATTTGGCTCCATCAGATCATGTTGCAGCTTCACTCTCTCACC
dot-bracket secondary structure
.((((((((.(((((((((.(((((((((((((((.....)).((((((((((((..(((...........(((((((((((((.(.....(.((((((.
.(.((.(((((...(((...((((((.....)))))).....)))....))))).)).)...)))))).)......).))).((((.......))))...
..))))))))))..........)))..))).))))))))).)))))))))))))))))))))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TGTGAGAGAATGAAGCTGCCAGCATGATCTGGTTGTCAGGCATGAGCCAAATCTATCCATGGTGTTGGTGGTACTGAAATTACCGCGTTTTCGAGGTTTT
TCGTCGTGTCAACTTGCGAAGGGAATTACGGGTTCTTGATGAGCATTGGTGATAGGAGGTGTGGGCTTGGTTAGTAGAGGTAGAATTATGATTGTTCTTG
TGAGTTTCAGTAAGAGGTGGGAGTGATTGGAATTTGGCTCCATCAGATCATGTTGCAGCTTCACTCTCTCACC
dot-bracket secondary structure
.((((((((.(((((((((.(((((((((((((((.....)).((((((((((((..(((...........(((((((((((((.(.....(.((((((.
.(.((.(((((...(((...((((((.....)))))).....)))....))))).)).)...)))))).)......).))).((((.......))))...
..))))))))))..........)))..))).))))))))).)))))))))))))))))))))).)))))))).
SIMILARITIES| miRBase osa-MIR167e: 9e-155 PMRD osa-miR167i: 0.0000000002 microPC miR167: 0.000004 | UniProt no hits RFAM MIR167_1: 2e-153 |
Identical with: osa-MIR167e from miRBase (MNEST041955) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
