miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST048864
species: Oryza sativa
miRNA family: MIR167
source: PMRD, original name: osa-miR167f

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GATCATCTGGCAGTTTCATC

mismatches: 0
bulges: 1
View larger
pre-miRNA
 CACAAGTGGATGAAGCTGCCAGCATGATCTGATCACAGTAGTTCTCTAGCTGATGATGATTTACAAAACCTAGAGACATGCATCAGATCATCTGGCAGTT
TCATCTTCTCATG

dot-bracket secondary structure
((..((.(((((((((((((((.((((((((((....(((..(((((((.(..((........))..).)))))))..))))))))))))))))))))))
)))))).))..))


SIMILARITIES
miRBase osa-MIR167f: 1e-59

PMRD sbi-miR167f: 0.00000002

microPC miR167: 0.000005		UniProt no hits

RFAM MIR167_1: 2e-58

Identical with: osa-MIR167f from miRBase (MNEST041956)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"



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