ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1431
source: PMRD, original name: osa-miR1431
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGCGAGTTGGCCCGCTTGC miRNA* AAGCGGGTCAACCCGTGAACC mismatches: 3 bulges: 0 |
pre-miRNA
GGGATTCAGAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGAT
CGACCCACTTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCG
CTTGCATCCCTAGATGCCGTCTTAGCTCTTAACAAGCATG
dot-bracket secondary structure
...............(((((((((((.(((((((((((((((.((..((((..((((((.(.(((((.(((.((((((((((.............(((.(
(((((((((((......)))))).))....)))).)))....((....))..))))))))))))).))))).).))))))..))))..)).)))))))))
)))))).)))))).....))))).(((.......)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ, Proc Natl Acad Sci U S A. 105:4951-4956(2008)., "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
GGGATTCAGAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGAT
CGACCCACTTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCG
CTTGCATCCCTAGATGCCGTCTTAGCTCTTAACAAGCATG
dot-bracket secondary structure
...............(((((((((((.(((((((((((((((.((..((((..((((((.(.(((((.(((.((((((((((.............(((.(
(((((((((((......)))))).))....)))).)))....((....))..))))))))))))).))))).).))))))..))))..)).)))))))))
)))))).)))))).....))))).(((.......)))...
SIMILARITIES| miRBase osa-MIR1431: 4e-135 PMRD no hits microPC miR1431: 2e-97 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ, Proc Natl Acad Sci U S A. 105:4951-4956(2008)., "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
