ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCTTATAACCTGAAACAGAG miRNA* CGTTTCATATTATAAGGTTT mismatches: 2 bulges: 1 |
pre-miRNA
CTGGAATTTCCTTCGTTTCATATTATAAGGTTTTCTAGCATTACTCATATTCACATATATATATATATGATAATATTCTAGATTCATTATCATATATATG
ATTATAGGTAATGCTAGAAAATCTTATAACCTGAAACAGAGGGAGTATATA
dot-bracket secondary structure
.....((((((((.((((((..(((((((((((((((((((((((.(((.(((........(((((((((((((...........)))))))))))))))
).))).)))))))))))))))))))))))..)))))).)))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGGAATTTCCTTCGTTTCATATTATAAGGTTTTCTAGCATTACTCATATTCACATATATATATATATGATAATATTCTAGATTCATTATCATATATATG
ATTATAGGTAATGCTAGAAAATCTTATAACCTGAAACAGAGGGAGTATATA
dot-bracket secondary structure
.....((((((((.((((((..(((((((((((((((((((((((.(((.(((........(((((((((((((...........)))))))))))))))
).))).)))))))))))))))))))))))..)))))).)))))))).....
SIMILARITIES| miRBase osa-MIR819b: 0.000000002 PMRD osa-miR819b: 0.000000002 microPC miR819: 0.0001 | UniProt no hits RFAM MIR1122: 0.0000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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