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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004922
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCTTATAACCTGAAACAGAG

miRNA*
CGTTTCATATTATAAGGTTT

mismatches: 2
bulges: 1

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pre-miRNA
CTGGAATTTCCTTCGTTTCATATTATAAGGTTTTCTAGCATTACTCATATTCACATATATATATATATGATAATATTCTAGATTCATTATCATATATATG
ATTATAGGTAATGCTAGAAAATCTTATAACCTGAAACAGAGGGAGTATATA


dot-bracket secondary structure
.....((((((((.((((((..(((((((((((((((((((((((.(((.(((........(((((((((((((...........)))))))))))))))
).))).)))))))))))))))))))))))..)))))).)))))))).....



SIMILARITIES
miRBase osa-MIR819b: 0.000000002

PMRD osa-miR819b: 0.000000002

microPC miR819: 0.0001
UniProt no hits

RFAM MIR1122: 0.0000000001
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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