ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1839
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGTAGATAGAACAGGTCTTG miRNA* AGACCTACTTATCTACCAACA mismatches: 4 bulges: 1 |
pre-miRNA
TCCTACATGAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGC
dot-bracket secondary structure
.............(((((((((...((((((((.((....))......))))))))..)))))))))............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TCCTACATGAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGC
dot-bracket secondary structure
.............(((((((((...((((((((.((....))......))))))))..)))))))))............
SIMILARITIES| miRBase mmu-mir-1839: 8e-35 PMRD no hits microPC no hits | UniProt no hits RFAM SCARNA15: 9e-32 | most similar mature miRNAs |
Identical with: eca-mir-1839 from miRBase (MNEST027309) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
