ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATCATCATCATCTTCTTCT miRNA* ATAAGGATGATGATGATGGCC mismatches: 4 bulges: 0 |
pre-miRNA
CATATTCATCAACATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCTTCTTCTTCTGCTGTAATGAAATTCGAAGAGCAGAACCAG
AATCATCATCACTCCAAACAGATATGCAGAACCTTTCAAGTGGATACAATCGATCACCATCATACTATTTCCTCGCTACTCGCAATGGAGGCTTCCGAAT
ACTGCGATAAGGATGATGATGATGGCCTCTATATC
dot-bracket secondary structure
............(((((((((((((((..((...((((..((((..((((((.((((.....................))))...)))))).))))..))
))..(((.............)))..((((.....(((.(((((((.............))).)))).(((((..((.....))...))))).....))).
.))))))..)))))))))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CATATTCATCAACATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCTTCTTCTTCTGCTGTAATGAAATTCGAAGAGCAGAACCAG
AATCATCATCACTCCAAACAGATATGCAGAACCTTTCAAGTGGATACAATCGATCACCATCATACTATTTCCTCGCTACTCGCAATGGAGGCTTCCGAAT
ACTGCGATAAGGATGATGATGATGGCCTCTATATC
dot-bracket secondary structure
............(((((((((((((((..((...((((..((((..((((((.((((.....................))))...)))))).))))..))
))..(((.............)))..((((.....(((.(((((((.............))).)))).(((((..((.....))...))))).....))).
.))))))..)))))))))))))))...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
