miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST049974
species: Oryza sativa
miRNA family: MIRf261
source: PMRD, original name: osa-miRf10759-akr

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
AGCTGGAGCTCAGCCAAACAG

miRNA*
GTTTGGCACAGCTCTAGCTCC

mismatches: 2
bulges: 0

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pre-miRNA
GGAGCTAAGGGCCTGTTTGGCACAGCTCTAGCTCCAACTCCACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCC

dot-bracket secondary structure
((((((..((..(((((((((..(((((((((((((.............)))))))))))))..)))))))))..))))))))

SIMILARITIES

miRBase no hits

PMRD osa-miRf11003-akr: 9e-35

microPC no hits

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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