miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST050424
species: Oryza sativa
miRNA family: MIRf1548
source: PMRD, original name: osa-miRf11209-akr

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAGTTTCATCTGCTTGTGG

miRNA*
 ATTAGGAGCTGAAGCTGCCAG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GTGCAACCATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATCAGATCATGCTGTGC
AGTTTCATCTGCTTGTGGCTGCAC

dot-bracket secondary structure
(((((.((((.((.((.(((((((((((((((((((((((....(((.....)))...(((((......))))).........)))))))))))))).))
))))))).)).)).)))).)))))


SIMILARITIES
miRBase osa-MIR167d: 7e-58

PMRD osa-miRf11210-akr: 5e-59

microPC miR167: 0.0000004		UniProt no hits

RFAM MIR167_1: 1e-59

Identical with: osa-miR167n from PMRD (MNEST048870)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record




Liczniki na strone;