ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1898
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTCAAGGTTCACAGGGGATC miRNA* ATAATCTGTTTACTTTGACCTAA mismatches: 4 bulges: 1 |
pre-miRNA
CTGTATGAACATAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACTAGC
dot-bracket secondary structure
).((((.....(((((((((((..(((((..((((((((......)))))).))..)))))..))))))))))).))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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CTGTATGAACATAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACTAGC
dot-bracket secondary structure
).((((.....(((((((((((..(((((..((((((((......)))))).))..)))))..))))))))))).))))....
SIMILARITIES| miRBase mmu-mir-1898: 9.0E-41 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: eca-mir-1898 from miRBase (MNEST027312) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
