miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST050879
species: Oryza sativa
source: PMRD, original name: osa-miRf11664-akr

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAGCTAGAGCTGTGCCAAA

miRNA*
 TGGCACAGCTCCGGCTCTAT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TCTGGACCGTTTGGCACAGCTCCGGCTCTATATAAGTTGGAGTTGGGAGCTAGAGCTGTGCCAAACCGGCCCAGA

dot-bracket secondary structure
(((((.((((((((((((((((..(((((..((........))..)))))..))))))))))))).))).)))))


SIMILARITIES
miRBase no hits

PMRD osa-miRf11663-akr: 3e-37

microPC no hits		UniProt no hits

RFAM no hits

Identical with: osa-miRf11663-akr from PMRD (MNEST050878)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record




Liczniki na strone;