ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11667-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGAGTCATCAGTGACGGGCC miRNA* CATTAGTATGCACCCCGTCACCGATGAGTCATCAG mismatches: 3 bulges: 0 |
pre-miRNA
TTACCCTATGGCCGATCACAGATGAGTCATCAGTGACGGGCCTGATTGTCATCTCAATCGGGCATTAGTATGCACCCCGTCACCGATGAGTCATCAGTGA
CGGGCCCTACGGTAA
dot-bracket secondary structure
.((((.((.((((..((((.(((((.(((((.((((((((.(((((((......)))))))((((....))))..)))))))).))))).))))).))))
..)))).)).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TTACCCTATGGCCGATCACAGATGAGTCATCAGTGACGGGCCTGATTGTCATCTCAATCGGGCATTAGTATGCACCCCGTCACCGATGAGTCATCAGTGA
CGGGCCCTACGGTAA
dot-bracket secondary structure
.((((.((.((((..((((.(((((.(((((.((((((((.(((((((......)))))))((((....))))..)))))))).))))).))))).))))
..)))).)).)))).
SIMILARITIES| miRBase no hits PMRD osa-miRf10073-akr: 1e-40 microPC no hits | UniProt no hits RFAM MIR821: 7e-55 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
