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Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST005119
species: Mus musculus
miRNA family: mir-1247
source: miRNEST

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACCCGTCCCGTTCGTCCCCGG

miRNA*
GGGAACGTCGAGACTGGAGC

mismatches: 5
bulges: 1

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pre-miRNA
GCAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACCT

dot-bracket secondary structure
........(((((.(((((((.((.(((.((..(((.(((((.....((.....)).))))).))).)).))).)).)))))))...)).)))....


SIMILARITIES
miRBase hsa-mir-1247: 2e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: mmu-mir-1247 from miRBase (MNEST032397)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





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