ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-154
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTATTACATGGCCAATCTCC miRNA* AGGTTGCCCATGGTGTGTTCA mismatches: 3 bulges: 0 |
pre-miRNA
GAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTTCGCACTAAAATCT
dot-bracket secondary structure
.......(((((..(((.((((((((.(((((..(((((((((.........)))))))))..))))).))))))))..)))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
GAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTTCGCACTAAAATCT
dot-bracket secondary structure
.......(((((..(((.((((((((.(((((..(((((((((.........)))))))))..))))).))))))))..)))))))).......
SIMILARITIES| miRBase mmu-mir-496: 4e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 7e-30 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
