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Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST005120
species: Mus musculus
miRNA family: mir-154
source: miRNEST

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGTATTACATGGCCAATCTCC

miRNA*
 AGGTTGCCCATGGTGTGTTCA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTTCGCACTAAAATCT

dot-bracket secondary structure
).......(((((..(((.((((((((.(((((..(((((((((.........)))))))))..))))).))))))))..)))))))).......


SIMILARITIES
miRBase mmu-mir-496: 4.0E-31

PMRD no hits

microPC no hits		UniProt no hits

RFAM 4mir-154: 7.0E-30		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




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