ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-3109
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGGCCATCTCATCCAGATA miRNA* AATGGATGCGATGGTTCCCAT mismatches: 5 bulges: 0 |
pre-miRNA
GCTCTCTGCCTGCTCCTGTAAATGGATGCGATGGTTCCCATGCTGTTCTGAGGCAGAGCTAGGGCCATCTCATCCAGATACTGTGGAGATGGTACAA
dot-bracket secondary structure
.......(((..((((.(((..((((((.((((((((...((((.......))))......)))))))).))))))..)))...))))..)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTCTCTGCCTGCTCCTGTAAATGGATGCGATGGTTCCCATGCTGTTCTGAGGCAGAGCTAGGGCCATCTCATCCAGATACTGTGGAGATGGTACAA
dot-bracket secondary structure
.......(((..((((.(((..((((((.((((((((...((((.......))))......)))))))).))))))..)))...))))..)))....
SIMILARITIES| miRBase mmu-mir-3109: 8e-45 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: mmu-mir-3109 from miRBase (MNEST032569) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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