ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf12057-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGGCTGACATGTGGGCCCGA miRNA* GGGCCCACATGTCAGCCTCACT mismatches: 2 bulges: 0 |
pre-miRNA
CAAATGCCACCCGGGCCCACATGTCAGCCTCACTCTCCATTCAAACAAAAGTGATGCGGGACCCGATAATGAGTAAGGCTGACATGTGGGCCCGAGTGGT
ATTTG
dot-bracket secondary structure
((((((((((.(((((((((((((((((((.((((..((((........))))...(((...))).....)))).))))))))))))))))))).)))))
)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CAAATGCCACCCGGGCCCACATGTCAGCCTCACTCTCCATTCAAACAAAAGTGATGCGGGACCCGATAATGAGTAAGGCTGACATGTGGGCCCGAGTGGT
ATTTG
dot-bracket secondary structure
((((((((((.(((((((((((((((((((.((((..((((........))))...(((...))).....)))).))))))))))))))))))).)))))
)))))
SIMILARITIES| miRBase osa-MIR1440: 3e-26 PMRD osa-miRf12058-akr: 6e-55 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miRf12056-akr from PMRD (MNEST051271) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
