miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST051272
species: Oryza sativa
source: PMRD, original name: osa-miRf12057-akr

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAAGGCTGACATGTGGGCCCGA

miRNA*
 GGGCCCACATGTCAGCCTCACT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CAAATGCCACCCGGGCCCACATGTCAGCCTCACTCTCCATTCAAACAAAAGTGATGCGGGACCCGATAATGAGTAAGGCTGACATGTGGGCCCGAGTGGT
ATTTG

dot-bracket secondary structure
((((((((((.(((((((((((((((((((.((((..((((........))))...(((...))).....)))).))))))))))))))))))).)))))
)))))


SIMILARITIES
miRBase osa-MIR1440: 3e-26

PMRD osa-miRf12058-akr: 6e-55

microPC no hits		UniProt no hits

RFAM no hits

Identical with: osa-miRf12056-akr from PMRD (MNEST051271)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record




Liczniki na strone;