miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST051279
species: Oryza sativa
source: PMRD, original name: osa-miRf12064-akr

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GATCTTTAGTCCTGGTTGGTAACA

miRNA*
TTACCAACCGGGACTAAAGATCTC

mismatches: 0
bulges: 0

View larger

pre-miRNA
AGATCGATCTTTAGTCCTGGTTGGTAACACGAAGATCGGTCAGCCACGTGGCCGGCTGATCCATCTTTAGTGTTACCAACCGGGACTAAAGATCTCT

dot-bracket secondary structure
.....(((((((((((((((((((((((((((((((.((((((((........)))))))).)))))).)))))))))))))))))))))))))...

SIMILARITIES

miRBase no hits

PMRD osa-miRf12065-akr: 3e-50

microPC no hits

UniProt no hits

RFAM no hits

Identical with: osa-miRf12065-akr from PMRD (MNEST051280)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record