miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051321
species: Prunus armeniaca
miRNA family: MIR157
source: PMRD, original name: par-miR157

Taxonomy by NCBI:
Prunus armeniaca Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 GCTCTGGGGTTTTGTTCA

mismatches: 7
bulges: 1
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pre-miRNA
 TTGACAGAAGAGAGAGAGCACGCTAGGCTAGAGGTACAAAAGAGGCATTTTATATGAGAGAGATATGTAGCAATCCTCGCTTTTTAATAACCATGCCTGC
TCTGGGGTTTTGTTCA

dot-bracket secondary structure
..(((((((.....((((((.((..((..((((((......((((.((((((((((.......))))))).)))))))))))))......))..)).)))
)))....)))))))..


SIMILARITIES
miRBase far-MIR529: 0.00009

PMRD par-miR156: 3e-60

microPC miR157: 0.00009		UniProt no hits

RFAM no hits

Identical with: par-miR156 from PMRD (MNEST051320)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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