miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Phaseolus coccineus



ABOUT THIS RECORD

ID: MNEST051323
species: Phaseolus coccineus
source: PMRD, original name: pco-miR157

Taxonomy by NCBI:
Phaseolus coccineus Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAT

miRNA*
 GTTCATGGTTACATAGAAGAAATTATTCTCCACGACAGTCAACT

mismatches: 10
bulges: 23
View larger
pre-miRNA
 TTGACAGAAGATAGAGAGCATCCTTTGAGGCCAGCAACAGTGATTTGAGTTTCAAGATCTCAATGGGAAACTTTATTTCAATCACATGCTTGCCTCAAGG
TTTATTAATGTTCATGGTTACATAGAAGAAATTATTCTCCACGACAGTCAACTGCATTTTTGCGACGCCTCTCATTATGGCCAA

dot-bracket secondary structure
(((((..........((((((.(((((((((.((((...((((((.(((((((.............)))))))......)))))).)))).)))))))))
.......))))))...(((....((((.......))))....))).)))))..(((....)))...(((.........)))...


SIMILARITIES
miRBase vvi-MIR156i: 0.0006

PMRD lja-miR157c: 0.00000000004

microPC miR157: 0.0006		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record




Liczniki na strone;