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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST051334
species: Picea glauca
miRNA family: MIR160
source: PMRD, original name: pga-miR160

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCTTACAAGGAGCCAAGCA

mismatches: 4
bulges: 0
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pre-miRNA
 TGCCTGGCTCCCTGTATGCCACATACAAGGCCCAGTCATATGTTGATTGGCTTCATAGGTGGCTTACAAGGAGCCAAGCA

dot-bracket secondary structure
.((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).)).


SIMILARITIES
miRBase pab-MIR160a: 4e-40

PMRD zma-miR160m: 0.000004

microPC miR160: 4e-40		UniProt no hits

RFAM mir-160: 0.00007

Identical with: pab-MIR160a from miRBase (MNEST039374)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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