ABOUT THIS RECORDspecies: Picea glauca
source: PMRD, original name: pga-miR163
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGAAGACTTGGAGCTTCGA miRNA* GGACATCAGCAGACCACAATCCCCGTCGCA mismatches: 13 bulges: 14 |
pre-miRNA
TGAAGAAGACTTGGAGCTTCGACTTGGACTTACAGTTACAGGAAGGACATCAGCAGACCACAATCCCCGTCGCA
dot-bracket secondary structure
.......(((..(((..(((..(((((((.....))).))))..)))..((....))......)))..)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGAAGAAGACTTGGAGCTTCGACTTGGACTTACAGTTACAGGAAGGACATCAGCAGACCACAATCCCCGTCGCA
dot-bracket secondary structure
.......(((..(((..(((..(((((((.....))).))))..)))..((....))......)))..)))...
SIMILARITIES| miRBase no hits PMRD pta-miR163b: 2e-29 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
