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Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST051336
species: Picea glauca
miRNA family: MIR166
source: PMRD, original name: pga-miR166

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCTT

miRNA*
 TGATTTGAAGGCAGGCTGTTG

mismatches: 7
bulges: 2
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pre-miRNA
 ATGATTTGAAGGCAGGCTGTTGAAGATTATCTCGGACCAGGCTTCATTCCTTGCATCCAAACTCTTTAAGTACT

dot-bracket secondary structure
..((..(((((.(.(((((..((......)).))).)).).))))).)).........................


SIMILARITIES
miRBase pab-MIR166b: 1e-36

PMRD ptc-miR166o: 0.0000008

microPC miR166: 0.00001		UniProt no hits

RFAM mir-166: 0.0000002

Identical with: pab-MIR166b from miRBase (MNEST039377)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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