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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051342
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR171
source: PMRD, original name: ppd-miR170

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGCCAATATC

miRNA*
 AGAGAGCTGGTGATTGAGCC

mismatches: 12
bulges: 2
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pre-miRNA
 GAAGCCCACTGCCCACCATACCCAATATCAAAATCAACAACGTGAATTCTCTCAAACCCCTCAAAAGCCTCAAGAAGGGCTTGGTTACAAGTAAAATTTG
CAAACTGAAGGATCGGTGAGATCTCAGAGAAGGATTTATAAGCACCAATCTTGAAAATCGGGTTATAAGCAGTACCAATAGAGTTGTTATTGTTCATATT
GAGAAGTAATTGCAAGGCCTCCTTGAAGTAAAAAGCAGTCCTTTGATAAGGCTTACCGATTGGAACAGAGAGCTGGTGATTGAGCCGCGCCAATATC

dot-bracket secondary structure
.......(((((.......((((..................(..((((..((..((((......((((((......))))))))))...))...))))..
).......(((((.((((((((((.......)))))).....)))).))))).......)))).....))))).(((((...((.((((((.(((.....
))).)))))).)).((((((..(..(((............)))..)..))))))....)))))......(.((((((......)))).)))......


SIMILARITIES
miRBase bdi-MIR171a: 0.00000006

PMRD gma-miR171m: 2e-17

microPC miR171: 0.001		UniProt sp|O81316|SCL6_ARATH: 1e-30

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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