ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR171
source: PMRD, original name: ppe-miR171
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCGTGGCTCAATCAAA mismatches: 0 bulges: 0 |
pre-miRNA
ATGATGTTGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATCATTATCAGTC
dot-bracket secondary structure
.(((((.(((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))))))))))))).)))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGATGTTGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATCATTATCAGTC
dot-bracket secondary structure
.(((((.(((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))))))))))))).)))))...
SIMILARITIES| miRBase vvi-MIR171i: 0.000000000000005 PMRD ppe-miR170: 3e-50 microPC miR171: 1e-43 | UniProt no hits RFAM MIR171_1: 0.00000000000009 |
Identical with: ppe-miR170 from PMRD (MNEST051345) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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