ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: PMRD, original name: ppt-miR166c
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGCCGTCTGGACCGGAG mismatches: 3 bulges: 0 |
pre-miRNA
ACTTGGTGCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCG
AGGGAGTTTCATAGCAGTGCTAT
dot-bracket secondary structure
...(((..(..((((..((((..(((.((((((((..((((((.((((((((.(((((.......))).)).)))))))).))))))..)))))))).))
)..))))..))).)..)..))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
ACTTGGTGCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCG
AGGGAGTTTCATAGCAGTGCTAT
dot-bracket secondary structure
...(((..(..((((..((((..(((.((((((((..((((((.((((((((.(((((.......))).)).)))))))).))))))..)))))))).))
)..))))..))).)..)..))).
SIMILARITIES| miRBase ppt-MIR166c: 1e-65 PMRD ppt-miR166d: 0.0000000004 microPC miR166: 0.0000004 | UniProt no hits RFAM mir-166: 1e-38 |
Identical with: ppt-MIR166c from miRBase (MNEST039466) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
