ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: PMRD, original name: ppt-miR166e
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGCCGCATGGACCGAAG mismatches: 5 bulges: 0 |
pre-miRNA
AATGTGCTTTTGGAGTTGTGAACCTTGCTGTGAGGAATGCCGCATGGACCGAAGCTATGTGCTCCATCTTAACGTGGTGGTATTGATACTACGTTTCGGA
CCAGGCTTCATTCCCCTCAGCGCAGTTTCATCATGGTGATGGACGG
dot-bracket secondary structure
..(((.((.(((..((.(((((.(((((((.(.((((((..((.(((.(((((((...((((.(((((.......)))))....).)))...))))))).
))).))..)))))).).))))).)).))))).))..))).))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
AATGTGCTTTTGGAGTTGTGAACCTTGCTGTGAGGAATGCCGCATGGACCGAAGCTATGTGCTCCATCTTAACGTGGTGGTATTGATACTACGTTTCGGA
CCAGGCTTCATTCCCCTCAGCGCAGTTTCATCATGGTGATGGACGG
dot-bracket secondary structure
..(((.((.(((..((.(((((.(((((((.(.((((((..((.(((.(((((((...((((.(((((.......)))))....).)))...))))))).
))).))..)))))).).))))).)).))))).))..))).))))).
SIMILARITIES| miRBase ppt-MIR166e: 3e-79 PMRD ppt-miR166g: 0.000000000008 microPC miR166: 0.0000005 | UniProt no hits RFAM mir-166: 1e-47 |
Identical with: ppt-MIR166e from miRBase (MNEST039468) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
