miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST051444
species: Physcomitrella patens
miRNA family: MIR898
source: PMRD, original name: ppt-miR898b

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGCTGTGCACTACTTAGTAC

miRNA*
GCTGAGTAGTGCACAGCAATA

mismatches: 0
bulges: 0

View larger
pre-miRNA
TACTGCAGAACTTAGTTACAGATTCATCTGCTTTGTTCATTTCCGGCATCTTGCTGTGCACTACTTAGTACGCGCGTAGTTGCAGGCATTCCGGGTGCAG
CAACTGACGCGGAAGACTTTTCCCAGAGTGTGCGCTTCAACTGGCGTGCTGAGTAGTGCACAGCAATATGCTGGGCATGGACAGCTACCACCGCTGAGTT
CGCTGTATAGAACGTTTGCT


dot-bracket secondary structure
(((.((.(((((((((..((((....))))..((((((((.((((((((.(((((((((((((((((((((((...((((((.((((.(((((.((.(((
...))))).))))).((((......))))....))))))))))))))))))))))))))))))))).)))))))).))))))))........))))))))
))).))).............



SIMILARITIES
miRBase ppt-MIR898b: 3e-123

PMRD ppt-miR898a: 0.00000005

microPC miR898: 0.000003
UniProt no hits

RFAM no hits

Identical with: ppt-MIR898b from miRBase (MNEST039540)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence

references

[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




Liczniki na strone;