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Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST051449
species: Physcomitrella patens
miRNA family: MIR904
source: PMRD, original name: ppt-miR904b

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTGTCAATGTTTAGGGGCA

miRNA*
CCCCTAAATGTTGGCAAGACC

mismatches: 2
bulges: 0

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pre-miRNA
CTTTGGAGCGATGTGTGTCATGATGGCGGTATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGC
GAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATTGGGACCGACGCTGGATCAGCAGAA
GTCAAAAGACACAATTGTGA


dot-bracket secondary structure
.......(((((.((((((.((((..((((...(((((.(((((((..(((((((((((((((((((((...(((.(((.(((.((((((...((..(((
((........)))))..)))))))))))))))))...)))))))))))))))))))))..)))))))))))).......))))..((((...))))....
))))...)))))))))))..



SIMILARITIES
miRBase ppt-MIR904b: 3e-123

PMRD ppt-miR904a: 0.000000000000003

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ppt-MIR904b from miRBase (MNEST039571)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence

references

[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




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