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Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST051453
species:
Physcomitrella patens
miRNA family:
MIR1026
source:
PMRD, original name:
ppt-miR1026a
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGAAAGACTTGAGAGGACA
miRNA*
TTCTTTCAAGCCTTCCTCGGA
mismatches:
3
bulges:
0
View larger
pre-miRNA
ATGAAAGTTCTTGAGACACTCTCTAGGTC
TGAGAAAGACTTGAGAGGACA
CTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTG
GTTCCCTGAGCATTTGCAGGACAG
TTCTTTCAAGCCTTCCTCGGA
CTTTGGATTGTTTGTTCCATATCATG
dot-bracket secondary structure
((((.........(((((.(((..(((((
((((.(((.(((((((((((.
.((((.(((..((.((((((((..(....(((((......)))))..)..
)))))).))))..))).))))..)
)))))))))).))).))))))
))).))).)))))........)))).
SIMILARITIES
miRBase
ppt-MIR1026a
:
4e-94
PMRD
ppt-miR1026b
:
0.000000009
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ppt-MIR1026a
from miRBase (
MNEST039584
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Axtell MJ, Snyder JA, Bartel DP,
Plant Cell. 19:1750-1769(2007).
,
"Common functions for diverse small RNAs of land plants"