ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR156
source: PMRD, original name: pta-miR156a
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCACATC miRNA* TGTGGTCTCCATGATTCTGTC mismatches: 4 bulges: 1 |
pre-miRNA
CGATGACAGAAGATAGAGAGCACATCCGCTCACATGCCGGGACTCTGCGTTTGAGGTGTATGTGGTCTCCATGATTCTGTCATC
dot-bracket secondary structure
)((((((((((.((.((((.(((((.((((((.((((.((....)))))).))).))).))))).)))).))..))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
CGATGACAGAAGATAGAGAGCACATCCGCTCACATGCCGGGACTCTGCGTTTGAGGTGTATGTGGTCTCCATGATTCTGTCATC
dot-bracket secondary structure
)((((((((((.((.((((.(((((.((((((.((((.((....)))))).))).))).))))).)))).))..))))))))))
SIMILARITIES| miRBase pta-MIR156a: 6.0E-42 PMRD pta-miR156b: 3.0E-25 microPC miR157: 1.0E-39 | UniProt no hits RFAM no hits |
Identical with: miR157 from microPC (MNEST046812), pta-MIR156a from miRBase , miR156 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
